Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lilnes and tissue samples

Marc Streit; Samuel Gratzl; Holger Stitz; Thomas Zichner; Andreas Wernitznig; Christian Haslinger

doi:10.1093/bioinformatics/btz009

Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lilnes and tissue samples

Marc Streit
, Samuel Gratzl
, Holger Stitz
, Thomas Zichner
, Andreas Wernitznig
, Christian Haslinger

Institute of Computer Graphics

Research output: Contribution to journal › Article › peer-review

Abstract

Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.

Original language	English
Pages (from-to)	3140-3142
Number of pages	3
Journal	Bioinformatics
Volume	35
Issue number	17
DOIs	https://doi.org/10.1093/bioinformatics/btz009
Publication status	Published - Sept 2019

Fields of science

102 Computer Sciences
102003 Image processing
102008 Computer graphics
102015 Information systems
102020 Medical informatics
103021 Optics

JKU Focus areas

Digital Transformation

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1093/bioinformatics/btz009

Cite this

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abstract = "Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.",

author = "Marc Streit and Samuel Gratzl and Holger Stitz and Thomas Zichner and Andreas Wernitznig and Christian Haslinger",

year = "2019",

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doi = "10.1093/bioinformatics/btz009",

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AU - Streit, Marc

AU - Gratzl, Samuel

AU - Stitz, Holger

AU - Zichner, Thomas

AU - Wernitznig, Andreas

AU - Haslinger, Christian

PY - 2019/9

Y1 - 2019/9

N2 - Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.

AB - Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.

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U2 - 10.1093/bioinformatics/btz009

DO - 10.1093/bioinformatics/btz009

M3 - Article

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VL - 35

SP - 3140

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JF - Bioinformatics

IS - 17

ER -

Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lilnes and tissue samples

Abstract

Fields of science

JKU Focus areas

UN SDGs

Access to Document

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Cite this