Improving Clinical Predictions with Multi-Modal Pre-training in Retinal Imaging

Emese Sükei, Elisabeth Rumetshofer, Niklas Schmidinger, Andreas Mayr, Ursula Schmidt-Erfurth, Günter Klambauer, Hrvoje Bogunović

Research output: Chapter in Book/Report/Conference proceedingConference proceedingspeer-review

Abstract

Self-supervised learning has emerged as a foundational approach for creating robust and adaptable artificial intelligence (AI) systems within medical imaging. Specifically, contrastive representation learning methods, trained on extensive multi-modal datasets, have showcased remarkable proficiency in generating highly adaptable representations suitable for a multitude of downstream tasks. In the field of ophthalmology, modern retinal imaging devices capture both 2D fundus images and 3D optical coherence tomography (OCT) scans. As a result, large multi-modal imaging datasets are readily available and allow us to explore uni-modal versus multi-modal contrastive pre-training. After pre-training on 153,306 scan pairs, we showcase the transferability and efficacy of these acquired representations via fine-tuning on multiple external datasets, explicitly focusing on several clinically pertinent prediction tasks derived from OCT data. Additionally, we illustrate how multi-modal pre-training enhances the exchange of information between OCT, a richer modality, and the more cost-effective fundus imaging, ultimately amplifying the predictive capacity of fundus-based models.
Original languageEnglish
Title of host publication2024 IEEE International Symposium on Biomedical Imaging (ISBI)
Editors IEEE
Number of pages5
DOIs
Publication statusPublished - 2024

Fields of science

  • 305907 Medical statistics
  • 202017 Embedded systems
  • 202036 Sensor systems
  • 101004 Biomathematics
  • 101014 Numerical mathematics
  • 101015 Operations research
  • 101016 Optimisation
  • 101017 Game theory
  • 101018 Statistics
  • 101019 Stochastics
  • 101024 Probability theory
  • 101026 Time series analysis
  • 101027 Dynamical systems
  • 101028 Mathematical modelling
  • 101029 Mathematical statistics
  • 101031 Approximation theory
  • 102 Computer Sciences
  • 102001 Artificial intelligence
  • 102003 Image processing
  • 102004 Bioinformatics
  • 102013 Human-computer interaction
  • 102018 Artificial neural networks
  • 102019 Machine learning
  • 102032 Computational intelligence
  • 102033 Data mining
  • 305901 Computer-aided diagnosis and therapy
  • 305905 Medical informatics
  • 202035 Robotics
  • 202037 Signal processing
  • 103029 Statistical physics
  • 106005 Bioinformatics
  • 106007 Biostatistics

JKU Focus areas

  • Digital Transformation

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