Identification of non reliable probes on customized Affymetrix Mouse430_2 platform

Noura Chelbat, Adetayo Kasim, Ulrich Bodenhofer, Willem Talloen, Sepp Hochreiter, Ziv Shkedy

Research output: Chapter in Book/Report/Conference proceedingConference proceedingspeer-review

Abstract

Oligonucleotide probes on customized CDFs are based on the latest genome and transcriptome information. Non-reliable/bad probes miss signals which are detected by the majority of probes in a probe set. We detected on mice datasets that probes inconsistency can be discerned with accuracies between 60 and 70% even in alternative annotations
Original languageEnglish
Title of host publicationISMB 2010 Proceedings
Number of pages1
Publication statusPublished - Jul 2010

Fields of science

  • 101004 Biomathematics
  • 101027 Dynamical systems
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  • 102 Computer Sciences
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  • 305901 Computer-aided diagnosis and therapy
  • 305905 Medical informatics
  • 305907 Medical statistics
  • 102032 Computational intelligence
  • 102033 Data mining
  • 101031 Approximation theory

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