Toxicity Prediction using Deep Learning

Activity: Talk or presentationInvited talkunknown

Description

Everyday we are exposed to various chemicals via food additives, cleaning, and cosmetic products - and some of them might be toxic. However testing the toxicity of compounds in such products and drug candidates by biological experiments is neither financially nor logistically feasible. Therefore the government agencies NIH, EPA and FDA launched the "Tox21 Data Challenge" to assess the performance of computational methods in predicting the toxicity of chemical compounds. Though deep networks were never applied to tox prediction, they clearly outperformed all other participating methods. Their strength is that they automatically learn features that correspond to well-established toxicophores but in most cases they construct new ones. Our deep learning approach won 9 out of 15 challenges including both panel-challenges (nuclear receptors and stress response) as well as the overall Grand Challenge. Deep learning set a new standard in tox prediction.
Period28 May 2015
Event titleDeeL@BiCi: Deep Learning: Theory, Algorithms, and Applications
Event typeConference
LocationItalyShow on map

Fields of science

  • 305 Other Human Medicine, Health Sciences
  • 102019 Machine learning
  • 304 Medical Biotechnology
  • 303 Health Sciences
  • 302 Clinical Medicine
  • 301 Medical-Theoretical Sciences, Pharmacy
  • 102 Computer Sciences
  • 106005 Bioinformatics
  • 106007 Biostatistics
  • 304003 Genetic engineering
  • 106041 Structural biology
  • 102010 Database systems
  • 101018 Statistics
  • 106023 Molecular biology
  • 106002 Biochemistry
  • 102001 Artificial intelligence
  • 102015 Information systems
  • 101004 Biomathematics
  • 102004 Bioinformatics

JKU Focus areas

  • Health System Research
  • Computation in Informatics and Mathematics
  • Clinical Research on Aging
  • Nano-, Bio- and Polymer-Systems: From Structure to Function
  • Medical Sciences (in general)